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Meta-analysis of single-cell RNA sequencing co-expression in human neural organoids reveals their high variability in recapitulating primary tissue

Authors
Jonathan M. Werner, Jesse Gillis
Citation
Werner, J.M. and Gillis, J. Meta-analysis of single-cell RNA sequencing co-expression in human neural organoids reveals their high variability in recapitulating primary tissue. PLoS Biology (2024).
https://doi.org/10.1371/journal.pbio.3002912
Summary
Leveraging a meta-analytic, cell type–aware coexpression framework across 4.5 million single cells, this work sets a field-wide benchmark for how faithfully human neural organoids capture developing brain biology, pinpoints reproducible deficits such as ECM/vascular programs, and provides an R toolkit for routine, protocol-agnostic QC.
Resource Name Resource URL Description
Zenodo Data and Code https://doi.org/10.5281/zenodo.13946 Code and Data Download: Zenodo release for meta-analysis of scRNA-seq co-expression in Human Neural Organoids Reveals High Variability in Recapitulating Primary Tissue