Developmental mouse brain common coordinate framework

Authors

Fae N. Kronman, Josephine K. Liwang, Rebecca Betty, Daniel J. Vanselow, Yuan-Ting Wu, Nicholas J. Tustison, Ashwin Bhandiwad, Steffy B. Manjila, Jennifer A. Minteer, Donghui Shin, Choong Heon Lee, Rohan Patil, Jeffrey T. Duda, Jian Xue, Yingxi Lin, Keith C. Cheng, Luis Puelles, James C. Gee, Jiangyang Zhang, Lydia Ng & Yongsoo Kim

Citation

Kronman, F.N., Liwang, J.K., Betty, R. et al. Developmental mouse brain common coordinate framework. Nat Commun 15, 9072 (2024).

https://doi.org/10.1038/s41467-024-53254-w

Summary

We created a 3D developmental common coordinate framework (DevCCF) spanning embryonic day (E)11.5, E13.5, E15.5, E18.5, and postnatal day (P)4, P14, and P56. The DevCCF is an openly accessible resource for multi-study data integration to advance our understanding of brain development.

Nature Collection

Kronman et al., Nature Communications

Resource Name	Resource URL	Description
DevCCF	https://doi.org/10.6084/m9.figshare.2	Data download: Figshare release of files for E11, E13.5, E15.5, E18.5, P4, P14 and P56 mouse brain CCF.
Figshare: unwarped LSFM templates	https://doi.org/10.6084/m9.figshare.2	Data download: Unwarped LSFM templates for 7 ages of developing mouse brain.
DevCCF Interactive Viewer	https://kimlab.io/brain-map/DevCCF/	Data exploration: Lab site for DevCCF.